Salmon River

ALTO HSR · Environment · Salmon River Watershed

A River in the Path of Two Rail Corridors

What the proposed Alto high-speed rail line means for the Salmon River watershed — and why neither route can be called safe for the environment.

Based on Green (2005), The Salmon River Habitat Strategy Prepared by Friends of the Salmon River February 2026

Consultation note. Alto’s public consultation closed April 24, 2026. The Salmon River watershed sits directly in the path of both proposed route options between Peterborough and Ottawa. Neither corridor underwent a proper environmental assessment of the watershed’s documented ecological conditions. Public comments form the official record that Alto must respond to.
Core Finding. The Salmon River watershed spans 921 km² of eastern Ontario and is home to six endangered species, multiple protected natural areas, and a wetland system that regulates water for downstream communities. Both proposed Alto corridors pass through it — but they threaten different halves of the watershed in different ways. The Northern route would damage the watershed’s ecological engine: its intact Shield forests and wetlands. The Southern route would compound decades of stress in the very areas where restoration has been identified as most urgently needed.
The Watershed
A watershed of two halves

The Salmon River begins near Cloyne, just south of Bon Echo Provincial Park, and flows through Lennox & Addington, Frontenac, and Hastings Counties before emptying into the Bay of Quinte near Shannonville. Its 921 km² watershed is part of the Bay of Quinte Area of Concern — one of 43 Great Lakes Basin locations flagged by the International Joint Commission in 1985 as requiring active remediation. Decades of collaborative restoration work are underway. The Alto HSR project arrives in the middle of that effort.

The internal divide. The northern 57% of the watershed sits on the Precambrian Shield — ancient granite bedrock with intact forest, abundant wetlands, and near-pristine stream edges. The southern 43% sits on limestone bedrock — agricultural land where riparian buffers have been stripped, stream banks are degraded, and restoration is the top priority. The two proposed Alto corridors run through opposite halves.

The 2005 Salmon River Habitat Strategy measured six key ecological indicators across both zones and compared them to Environment Canada’s minimum guidelines. The differences are striking:

Habitat Indicator Guideline Shield (North) Limestone (South)
Wetland area>10%12.1% ✓11.1% ✓
Vegetation near wetlands (within 100m)100%99.7% ✓64.3% ⚠
Stream length vegetated>75%89.1% ✓52.5% ⚠
Riparian vegetation (within 30m of streams)100%98.4% ✓38.1% ⚠
Forest cover>30%85.6% ✓49.5% ✓
Interior forest habitat>5%38.6% ✓13.4% ⚠

⚠ Values marked with a warning symbol fall well below Environment Canada guidelines. Source: Green (2005), The Salmon River Habitat Strategy.

What these numbers mean. The Shield portion of the watershed is in excellent ecological health. The limestone portion is in trouble: only 38% of land within 30 metres of streams is still forested, against a guideline of 100%. The 2005 Habitat Strategy identified restoring those stream banks as the single most urgent priority for the entire watershed. Building a rail corridor through the southern zone would make that already-critical situation worse.
Northern Corridor Impacts
Damaging the watershed’s ecological engine

The Northern Corridor crosses the Precambrian Shield portion of the Salmon River watershed — the zone that is currently doing the most ecological work for the entire river system. Construction here would require blasting through granite ridges and using the blasted rock to fill wetlands and low-lying areas. This “cut-and-fill” method directly destroys what it passes through.

Wetland destruction and the Kennebec Complex
The Shield portion contains 12.1% wetland coverage — barely above the 10% minimum threshold. The Kennebec Wetland Complex is a vast network of hundreds of small wetlands that acts as a natural reservoir for the entire Salmon River, absorbing spring floods and releasing water slowly during droughts. Filling even a portion of this network with blasted rock could disrupt water flow throughout the watershed — affecting farms and municipalities downstream.
Fragmentation of continuous forest
The Shield zone has 85.6% forest cover — including 38.6% interior forest. A 60-metre rail corridor, plus construction access roads and staging areas, would cut through what is currently continuous forest. Once fragmented, interior forest cannot recover without decades of uninterrupted regrowth.
Protected Natural Areas in the Path

The Shield portion of the Salmon River watershed contains four Areas of Natural and Scientific Interest (ANSIs) — provincially designated natural heritage features protected under Ontario’s Provincial Policy Statement:

Hungry Lake Barrens · 4,953 ha
Possibly the largest undisturbed granite bedrock barrens area in southern Ontario. Home to the provincially rare Polygonum careyi.
Puzzle Lake ANSI · 2,138 ha
Contains the highest known number of provincially rare species in any comparable area in eastern or southern Ontario, including nationally rare Bear Oak and the endangered Toothcup.
Westplain Mud Lake ANSI · 941 ha
The largest extent of open and treed fen in the district — a rare and slow-recovering wetland type.
Harlowe Bog · 478 ha
A very large peat bog with the uncommon Eastern Chain-fern. Peat bogs are among the slowest-recovering ecosystems on earth.
The downstream consequence. The Shield wetlands and forests don’t just protect wildlife — they protect people. They slow spring floods, filter water before it reaches farms and towns, and maintain stream flows during dry summers. Damaging the Shield’s hydrological integrity could undermine these services for agricultural communities downstream and ultimately worsen water quality in the Bay of Quinte.
Southern Corridor Impacts
Compounding stress where restoration is most needed

The Southern Corridor passes through the limestone bedrock portion of the watershed — the area the 2005 Habitat Strategy identified as having the greatest restoration needs. Stream banks are already critically degraded. Wetland buffers are inadequate. Two decades of stewardship work by the Friends of the Salmon River and partner organizations have been slowly rebuilding what was lost. A high-speed rail corridor through this zone would cut against that effort.

Building where the damage is already worst
Only 38.1% of land within 30 metres of streams in the southern watershed is still forested — the guideline is 100%. The Southern route would cut a 60-metre corridor directly through these already-stripped riparian zones, further reducing the vegetated buffers that filter agricultural runoff before it reaches the river. This is the exact opposite of what the watershed needs.
Prime agricultural land, permanently lost
The Southern route passes through soils that are predominantly loam, clay loam, and clay — among the most productive agricultural land in the region. The 60-metre right-of-way would permanently remove farmland from production. Once under a rail bed, it does not come back.
Provincially Significant Wetlands at Risk

Several Provincially Significant Wetlands in the southern watershed could be directly affected, carrying legal protection under Ontario’s Wetlands Policy, which requires no net loss of wetland function:

Mud Creek Wetland · 329 ha
Home to four provincially significant species, including Least Bittern and Northern Harrier.
Pennell’s Creek Wetland · 220 ha
Notable for Brook Trout spawning and rearing; already experiencing disturbance from cattle grazing.
Otter Creek Wetland · 146 ha
Habitat for the endangered Loggerhead Shrike and five provincially significant species.
Big Marsh Wetland · 125 ha
A Bay of Quinte coastal wetland with traditional significance for the Mohawks of the Bay of Quinte; habitat for endangered Bald and Golden Eagles.
The Bay of Quinte connection. The Salmon River drains directly into the Bay of Quinte — a Great Lakes Area of Concern already impaired by excess nutrients and degraded fish and wildlife populations. Construction through the southern watershed’s already-compromised riparian zones would increase sediment and nutrient runoff into the river, running directly counter to the Bay of Quinte Remedial Action Plan’s restoration objectives.
Species at Risk
Six endangered species. Both corridors.

Six endangered species are documented within the Salmon River watershed. Several are found in both the northern and southern zones. A high-speed rail line through either corridor would affect critical habitat for animals and plants that have no other place to go.

Endangered
Juniper Sedge (Carex juniperorum)
Globally rare — fewer than 20 populations exist worldwide. The Salmon River Alvar hosts what may be the world’s largest known population. The Alvar straddles both the northern Shield and the southern limestone zones — meaning both routes pose a direct risk.
Threatened
Blanding’s Turtle
Travels several kilometres annually between wetlands, nesting sites, and overwintering habitat. A fenced 60-metre rail corridor is a barrier this slow-moving turtle cannot safely cross. Road and rail mortality are its most significant identified threats.
Endangered
Toothcup (Rotala ramosior)
Exists at only two lakes in Lennox & Addington County. One disturbance event — a change in water levels from construction — could eliminate it from the watershed entirely.
Endangered
Butternut (Juglans cinerea)
Already threatened by canker disease throughout its range. Construction-related disturbance compounds pressure on a species with little remaining resilience.
Endangered
Loggerhead Shrike
Only about 40 pairs remain in all of Ontario. Requires open areas with short grass for foraging; fencing and habitat fragmentation are particularly harmful. Found in the southern corridor zone around Otter Creek Wetland.
Endangered
Henslow’s Sparrow
The Canadian population is estimated at only 2–3 pairs. Any disturbance to undisturbed grassland habitat in the southern watershed could be catastrophic for the species in Canada.
Corridor Comparison
Both routes pose real environmental risks — but they are different in character
Impact Category Northern Corridor Southern Corridor
Primary habitat at riskIntact Shield forests, wetlands, and rock barrensAlready-degraded riparian zones and agricultural buffers
Forest coverFragments 85.6% forested area; cuts through contiguous interior forestFurther reduces 49.5% forest cover in an area that urgently needs reforestation
Wetland riskDirect filling of Shield wetlands; disrupts the Kennebec Complex hydrologyDestroys buffers around Provincially Significant Wetlands already at 64.3% vegetation
Riparian impactDestroys near-pristine (98.4%) Shield stream edgesFurther degrades critically low (38.1%) limestone stream cover
Endangered speciesToothcup, Butternut, Juniper Sedge, Blanding’s TurtleLoggerhead Shrike, Henslow’s Sparrow, King Rail, Juniper Sedge, Blanding’s Turtle
Construction methodCut-and-fill through granite: blasting ridges, filling swampsStandard grading through agricultural land and clay soils
Downstream consequencesLoss of flood attenuation and drought buffering for downstream communitiesIncreased sediment and nutrient loading into the Bay of Quinte
Restoration impactDamages the ecological “bank” that supports the whole watershedDirectly undermines priority restoration areas identified in 2005
Legal & Policy Context
Regulatory and policy concerns
Bill C-15 and expropriation powers

Federal budget legislation granted Alto enhanced expropriation powers and development holds along the proposed corridor. Combined with Bill C-5 (2024), the Minister of Transport may exempt the project from some standard environmental protections. This raises the real concern that the assessment process for the Salmon River watershed may be weakened or bypassed entirely.

Bay of Quinte Remedial Action Plan

The Bay of Quinte RAP is a binding commitment under the Canada-Ontario Agreement Respecting the Great Lakes Basin Ecosystem. It requires active restoration of the Salmon River watershed — not further degradation. Construction through either corridor would work against this federal-provincial commitment.

Frontenac Arch Biosphere Reserve

The UNESCO designation of the Frontenac Arch Biosphere Reserve obligates Canada to conserve biodiversity and promote sustainable development within the region. The northern portion of the Salmon River watershed overlaps with the Biosphere Reserve. This is an international commitment, not just a provincial one.

Ontario’s Provincial Policy Statement

The Salmon River Alvar’s status as a Provincially Significant ANSI means that Ontario’s Provincial Policy Statement directs that development not be permitted in significant natural heritage features. Multiple Provincially Significant Wetlands carry additional protection under Ontario’s Wetlands Policy, requiring no net loss of wetland function.

What Needs to Happen
Six things Alto must do before a route is chosen
1

Commission a rigorous, independent environmental impact assessment

It must specifically address the Salmon River watershed’s documented ecological conditions — using the 2005 Habitat Strategy as the baseline and updating it with current remote sensing data. A desktop review of existing mapping is not sufficient for a project of this scale.

2

Engage the watershed’s stewards directly

The Friends of the Salmon River, Quinte Conservation, the Frontenac Arch Biosphere Network, the Nature Conservancy of Canada, and the Stewardship Councils of Lennox & Addington, Frontenac, and Hastings Counties must be formal participants in corridor planning — not informed after decisions are made.

3

Ensure Bills C-5 and C-15 exemptions do not apply to this watershed

The federal exemption provisions that could allow Alto to bypass standard assessment processes must not be used to sidestep evaluation of impacts on the Salmon River’s designated natural heritage features.

4

Require binding habitat commitments for whichever route proceeds

Binding commitments must be established to avoid, minimize, and offset impacts on Provincially Significant Wetlands, endangered species habitat, and the Frontenac Arch wildlife corridor — with net-positive habitat outcomes as the measurable standard.

5

Re-examine whether alternative alignments can avoid the watershed entirely

The significant ecological costs of routing through this sensitive region — on either side of the geological divide — justify asking whether corridor alternatives that avoid the Salmon River watershed altogether have been adequately explored.

6

Update the 2005 Salmon River Habitat Strategy before any approvals

Twenty years of ecological change have occurred since the Habitat Strategy was completed. Current spatial data and remote sensing must establish a contemporary baseline before any construction approvals are granted.

Sources
1Green, D. (2005). The Salmon River Habitat Strategy. Comprehensive GIS-based habitat study. Primary baseline for this assessment.
2Friends of the Salmon River (2025). Organizational documentation and current records. friendsofthesalmonriver.ca
3Alto HSR Project. Public consultation materials, 2025–2026.
4Environment and Climate Change Canada. Recovery strategies: Blanding’s Turtle, Loggerhead Shrike, Henslow’s Sparrow, King Rail, Butternut, Toothcup. SARA Registry.
5Ontario MECP. Blanding’s Turtle General Habitat Description (2021).
6Frontenac Arch Biosphere Reserve. UNESCO MAB Programme. frontenacarchbiosphere.ca
7Nature Conservancy of Canada. Frontenac Arch land protection program.
8Bay of Quinte Remedial Action Plan. International Joint Commission / Environment and Climate Change Canada.

Prepared by Andrew Hyett, Geologist and Rock Mechanics Specialist · Reviewed by David Praskey, Aquatic Ecologist, and Susan Moore, President, Friends of the Salmon River · February 2026. Freely available for re-use and advocacy.